Publications

You can also find my articles on Google Scholar.

Journal Publications

An open-source framework for end-to-end analysis of electronic health record data
Heumos, L.; Ehmele, P; Treis, T.; Upmeier zu Belzen, J.; Roellin, E.; May, L.; Namsaraeva, A.; Horlava, N.; Shitov, V.; Zhang, X.; Zappia, L.; Knoll, R.; Lang, N.; Hetzel, L.; Virshup, I.; Sikkema, L.; Curion, F.; Eils, R.; Schiller, H.; Hilgendorff, A.; Theis, F. J. Nature Medicine 2024. Link

LarvaTagger: Manual and Automatic Tagging of Drosophila Larval Behaviour
Laurent, F.; Blanc, A.; May, L.; Gándara, L.; Cocanougher, B. T.; Jones, B. M. W.; Hague, P.; Barré, C.; Vestergaard, C. L.; Crocker, J.; Zlatic, M.; Jovanic, T.; Masson, J.-B. Bioinformatics 2024. Link

Panpipes: A Pipeline for Multiomic Single-Cell and Spatial Transcriptomic Data Analysis
Curion, F.; Rich-Griffin, C.; Agarwal, D.; Ouologuem, S.; Rue-Albrecht, K.; May, L.; Garcia, G. E. L.; Heumos, L.; Thomas, T.; Lason, W.; Sims, D.; Theis, F. J.; Dendrou, C. A. Genome Biology 2024. Link

Preprints

Pre-Training Artificial Neural Networks with Spontaneous Retinal Activity Improves Motion Prediction in Natural Scenes
May, L.; Gjorgjieva, J. Preprint on bioRxiv 2024. Link

Pertpy: an end-to-end framework for perturbation analysis
Heumos, L.; Ji, Y.; May, L.; Green, T.; Zhang X.; Wu X.; Ostner J.; Peidli, S.; Schumacher, A.; Hrovatin, K.; Müller, M., Chong, F.; Sturm, G.; Tejada, A.; Dann, E.; Dong, M.; Bahrami, M.; Gold I.;, Rybakov, S.; Namsaraeva, A.; Moinfar, A.; Zheng, Z.; Roellin E.; Mekki, I.; Sander, C.; Lotfollahi M.; Schiller, H.; Theis, F. J. Preprint on bioRxiv 2024. Link